All Classes
ABIParser
ABITrace
AbstractFolder
AbstractFormatter
AbstractParser
AccessKey
AccessPermission
AccessPermission.Article
AccessPermission.Type
AccessStatus
AccessTokenResource
AccessTokens
AccessType
Account
AccountController
AccountDAO
AccountPreferences
AccountResults
Accounts
AccountTransfer
AccountType
AccountUtils
AnnotationLocation
AnnotationResource
Annotations
ApiKey
ApiKeyDAO
ApiKeyResource
ApplicationInitialize
ArabidopsisSeed
ArabidopsisSeedData
ArrayDataJSONHandler
Article
Attachment
AttachmentDAO
AttachmentInfo
Attachments
Audit
AuditDAO
AuditType
AuthenticationException
AuthenticationInterceptor
Authorization
Authorization
AuthorizationException
AutoAnnotationBlastDbBuildTask
AutoCompleteField
AutoCompleteFieldValues
BioSafetyOption
Bl2SeqResult
BlastException
BlastPlus
BlastProgram
BlastQuery
BulkCSVUpload
BulkCSVUploadHeaders
BulkEntryCreator
BulkFileSBOLUpload
BulkUpload
BulkUploadAuthorization
BulkUploadAutoUpdate
BulkUploadController
BulkUploadDAO
BulkUploadDeleteTask
BulkUploadInfo
BulkUploadResource
BulkUploadStatus
BulkUploadValidation
BulkZipUpload
ByteArrayWrapper
Collection
CollectionCounts
CollectionEntries
CollectionResource
Collections
CollectionType
ColumnField
Comment
CommentDAO
ConfigResource
Configuration
ConfigurationController
ConfigurationDAO
ConfigurationKey
Curation
CustomEmail
CustomField
CustomFieldResource
CustomFields
DAOException
DAOFactory
DataModel
DefaultHmacSignature
DNAFeature
DNAFeatureComparator
DNAFeatureLocation
DNAFeatureNote
DNAFeatures
DNASequence
EditMode
Email
EmailFactory
Entries
EntriesAsCSV
Entry
EntryAuthorization
EntryBooleanPropertiesBridge
EntryController
EntryCreator
EntryDAO
EntryFactory
EntryField
EntryFields
EntryFolders
EntryHasFilterFactory
EntryHeaderValue
EntryHistory
EntryLinks
EntryPermissions
EntryPermissionTask
EntrySecurityFilterFactory
EntrySelection
EntrySelectionType
EntryType
EntryUtil
ErrorResponse
Experiment
ExperimentDAO
Experiments
ExtensionToMimeType
FastaFormatter
FastaParser
Feature
FeatureCurationModel
FeatureCurationModelDAO
FeatureDAO
FeaturedDNASequence
FeaturesTag
FieldFilter
FileBulkUpload
FileResource
Folder
FolderAuthorization
FolderContents
FolderController
FolderDAO
FolderDetails
FolderPermissions
FolderResource
Folders
FolderType
FormatterException
GenbankFormatter
GenbankLocation
GenBankParser
GeneralParser
Generation
GMail
Group
GroupController
GroupDAO
GroupResource
Groups
GroupType
HasEntry
HasEntryData
Headers
HeaderValue
HibernateRepository
HibernateSearch
HibernateUtil
History
HmacAuthorizor
HmacInputStream
HmacOutputStream
HmacSignature
HmacSignatureFactory
IAuthentication
IceApplication
ICEExceptionMapper
IceExecutorService
IceFilter
IceRequestFilter
IceResponseFilter
IceRestClient
ICESBOLParserVisitor
IceSequenceOntology
IceServletContextListener
IDataTransferModel
IFormatter
IndexBuildStatus
IndexerProgressMonitor
IndexType
InfoToModelFactory
InvalidCredentialsException
InvalidFormatParserException
IRepository
KeyTable
LblLdapAuthentication
Link
LinkType
LocalAuthentication
Logger
Manuscript
ManuscriptModel
ManuscriptModelDAO
ManuscriptResource
Manuscripts
ManuscriptStatus
MemoryKeyTable
Message
MessageDAO
MessageInfo
MessageResource
Messages
MessageStatus
ModelToInfoFactory
OriginTag
OwnerEntries
PackageAssembler
PageParameters
Parameter
ParameterDAO
ParsedEntryId
Part
Part.AssemblyStandard
PartData
PartDataJSONHandler
PartDataUtil
PartDefaults
PartInformation
PartnerEntries
PartnerResource
PartResource
PartSample
PartSequence
PartStatistics
PartWithSample
Permission
PermissionDAO
PermissionEntryBridge
PermissionException
PermissionResource
Permissions
PermissionsController
PigeonSBOLv
PlainParser
PlantType
Plasmid
PlasmidData
Preference
PreferenceInfo
PreferenceKey
PreferencesController
PreferencesDAO
ProcessedBulkUpload
ProgramTookTooLongException
QueryType
RebuildBlastIndexTask
RebuildLuceneIndexTask
ReferenceTag
RegistryPartner
RemoteAccess
RemoteAccessModel
RemoteAccessModelDAO
RemoteAccessPermission
RemoteClientModel
RemoteClientModelDAO
RemoteContact
RemoteEntries
RemoteEntriesAsCSV
RemoteEntry
RemoteFolder
RemoteFolders
RemotePartner
RemotePartnerDAO
RemotePartnerStatus
RemoteSequence
RemoteShareModel
RemoteShareModelDAO
RemoteTransfer
RemoteUser
RemoteUsers
Request
RequestDAO
RequestRetriever
RestClient
RestResource
Results
Sample
SampleAuthorization
SampleCreator
SampleDAO
SampleField
SampleHeaderValue
SampleRequest
SampleRequestStatus
SampleRequestType
SampleResource
SampleService
SampleType
SBOL2Formatter
SBOL2Visitor
SBOLFormatter
SBOLParser
SBOLVisitor
SBOLVisualDownloadServlet
SearchBoostField
SearchController
SearchFieldFactory
SearchQuery
SearchQuery.Parameters
SearchResource
SearchResult
SearchResults
SelectionMarker
SelectionMarkerDAO
Sequence
SequenceAnalysisController
SequenceController
SequenceDAO
SequenceFeature
SequenceFeature.AnnotationType
SequenceFeatureAttribute
SequenceFeatureComparator
SequenceFeatureDAO
SequenceFormat
SequenceInfo
SequenceUtils
Setting
SharedEntries
ShotgunSequence
ShotgunSequenceDAO
ShotgunSequenceDTO
SiteSettings
StatusType
Storage
Storage.StorageType
StorageDAO
StorageLocation
Strain
StrainData
Study
Tag
Tag.Type
Task
TaskStatus
TokenHash
TokenVerification
TraceSequence
TraceSequenceAlignment
TraceSequenceAlignmentInfo
TraceSequenceAnalysis
TraceSequenceDAO
TraceSequences
TransferredParts
TransferTask
Type
UserApiKeys
UserComment
UserFolder
UserGroup
UserIdAuthentication
UserPreferences
UserResource
UserSamples
UserSessions
UtilityException
Utils
Visibility
VisibleEntries
WebEntries
WebOfRegistries
WebOfRegistriesTask
WebPartners
WebResource
WebResult
WebSearch
WebSearch.SearchTask
WebSearchResults
WoRController