org.jbei.ice.lib.parsers.bl2seq

Class Bl2SeqResult

java.lang.Object

org.jbei.ice.lib.parsers.bl2seq.Bl2SeqResult

public class Bl2SeqResult
extends Object

Stores information about the bl2seq output.

Author:

Zinovii Dmytriv

Constructor Summary

Constructors

Constructor and Description
Bl2SeqResult(int score, int queryStart, int queryEnd, String querySequence, int subjectStart, int subjectEnd, String subjectSequence, int orientation)

Method Summary

Modifier and Type	Method and Description
int	getOrientation()
int	getQueryEnd()
String	getQuerySequence()
int	getQueryStart()
int	getScore()
int	getSubjectEnd()
String	getSubjectSequence()
int	getSubjectStart()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Bl2SeqResult

public Bl2SeqResult(int score,
                    int queryStart,
                    int queryEnd,
                    String querySequence,
                    int subjectStart,
                    int subjectEnd,
                    String subjectSequence,
                    int orientation)

Method Detail

getScore

public int getScore()

getQueryStart

public int getQueryStart()

getQueryEnd

public int getQueryEnd()

getQuerySequence

public String getQuerySequence()

getSubjectStart

public int getSubjectStart()

getSubjectEnd

public int getSubjectEnd()

getSubjectSequence

public String getSubjectSequence()

getOrientation

public int getOrientation()