org.jbei.ice.lib.utils

Class PackageAssembler

java.lang.Object

org.jbei.ice.lib.utils.PackageAssembler

public abstract class PackageAssembler
extends Object

Abstract class for assembling standardized format DNA.

Author:

Timothy Ham

Constructor Summary

Constructors

Constructor and Description
PackageAssembler()

Method Summary

Modifier and Type	Method and Description
protected abstract String	concatSequence(String part1Sequence, String part2Sequence) Concatinate two DNA sequences.
abstract Part	join(Part part1, Part part2) Join two standardized Parts.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PackageAssembler

public PackageAssembler()

Method Detail

join

public abstract Part join(Part part1,
                          Part part2)
                   throws UtilityException

Join two standardized Parts.

Parameters:

part1 -

part2 -

Returns:

joined Part object.

Throws:

UtilityException

concatSequence

protected abstract String concatSequence(String part1Sequence,
                                         String part2Sequence)
                                  throws UtilityException

Concatinate two DNA sequences.

Parameters:

part1Sequence -

part2Sequence -

Returns:

joined Part object.

Throws:

UtilityException