org.jbei.ice.lib.entry.sequence.composers.formatters

Class IceSequenceOntology

java.lang.Object

org.jbei.ice.lib.entry.sequence.composers.formatters.IceSequenceOntology

public class IceSequenceOntology
extends Object

Author:

Hector Plahar

Constructor Summary

Constructors

Constructor and Description
IceSequenceOntology()

Method Summary

Modifier and Type	Method and Description
static String	getFeatureType(String ontology)
static URI	getURI(String type)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IceSequenceOntology

public IceSequenceOntology()

Method Detail

getURI

public static URI getURI(String type)

getFeatureType

public static String getFeatureType(String ontology)

Parameters:

ontology - sequence ontology e.g,SO_0000298 for "mRNA"

Returns:

genbank feature type e.g. "mRNA" using above example