org.jbei.ice.lib.entry.sequence.composers.formatters

Class AbstractFormatter

java.lang.Object

org.jbei.ice.lib.entry.sequence.composers.formatters.AbstractFormatter

All Implemented Interfaces:

IFormatter

Direct Known Subclasses:

FastaFormatter, GenbankFormatter, SBOL2Formatter, SBOLFormatter

public class AbstractFormatter
extends Object
implements IFormatter

Abstract formatter implementing IFormatter interface.

Author:

Zinovii Dmytriv

Field Summary

Fields

Modifier and Type	Field and Description
static String	DEFAULT_NAMESPACE

Constructor Summary

Constructors

Constructor and Description
AbstractFormatter()

Method Summary

Modifier and Type	Method and Description
void	format(Sequence sequence, OutputStream outputStream) Interface method to take a Sequence object and output the formatted file to the OutputStream.
org.biojavax.Namespace	getNamespace()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_NAMESPACE

public static final String DEFAULT_NAMESPACE

See Also:

Constant Field Values

Constructor Detail

AbstractFormatter

public AbstractFormatter()

Method Detail

format

public void format(Sequence sequence,
                   OutputStream outputStream)
            throws FormatterException,
                   IOException

Description copied from interface: IFormatter

Interface method to take a Sequence object and output the formatted file to the OutputStream.

Specified by:

format in interface IFormatter

Throws:

FormatterException

IOException

getNamespace

public org.biojavax.Namespace getNamespace()