org.jbei.ice.storage.model

Class Feature

java.lang.Object

org.jbei.ice.storage.model.Feature

All Implemented Interfaces:

DataModel

@Entity
public class Feature
extends Object
implements DataModel

Represents a unique sequence annotation known to this instance of gd-ice.

Annotated sequences associated with entries are parsed, and their fields are saved into the database as Features. These features have unique identifiers via hash. In the future, select set of Features will be hand annotated with proper name, identification, genbankType, and then used for automatic identification and annotation of unknown sequences.

Author:

Timothy Ham, Zinovii Dmytriv

Constructor Summary

Constructors

Constructor and Description
Feature()
Feature(String name, String identification, String sequence, String genbankType)

Method Summary

Modifier and Type	Method and Description
FeatureCurationModel	getCuration()
String	getGenbankType()
String	getHash()
long	getId()
String	getIdentification()
String	getName()
String	getSequence()
String	getUri()
void	setCuration(FeatureCurationModel curation)
void	setGenbankType(String genbankType)
void	setHash(String hash)
void	setId(long id)
void	setIdentification(String identification)
void	setName(String name)
void	setSequence(String sequence)
void	setUri(String uri)
DNAFeature	toDataTransferObject()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Feature

public Feature()

Feature

public Feature(String name,
               String identification,
               String sequence,
               String genbankType)

Method Detail

getName

public String getName()

setName

public void setName(String name)

getIdentification

public String getIdentification()

setIdentification

public void setIdentification(String identification)

getGenbankType

public String getGenbankType()

setGenbankType

public void setGenbankType(String genbankType)

setId

public void setId(long id)

getId

public long getId()

Specified by:

getId in interface DataModel

setHash

public void setHash(String hash)

getHash

public String getHash()

setSequence

public void setSequence(String sequence)

getSequence

public String getSequence()

getUri

public String getUri()

setUri

public void setUri(String uri)

getCuration

public FeatureCurationModel getCuration()

setCuration

public void setCuration(FeatureCurationModel curation)

toDataTransferObject

public DNAFeature toDataTransferObject()

Specified by:

toDataTransferObject in interface DataModel