org.jbei.ice.storage.model

Class AnnotationLocation

java.lang.Object

org.jbei.ice.storage.model.AnnotationLocation

All Implemented Interfaces:

DataModel

@Entity
public class AnnotationLocation
extends Object
implements DataModel

Store the basepair location annotation for a SequenceFeature object.

Is able to record single residue or inbetween annotations.

Author:

Timothy Ham

Constructor Summary

Constructors

Constructor and Description
AnnotationLocation()
AnnotationLocation(int genbankStart, int end, SequenceFeature sequenceFeature)

Method Summary

Modifier and Type	Method and Description
int	getEnd()
int	getGenbankStart()
long	getId()
SequenceFeature	getSequenceFeature()
boolean	isInbetween()
boolean	isSingleResidue()
void	setEnd(int end)
void	setGenbankStart(int genbankStart)
void	setId(long id)
void	setInbetween(boolean inbetween)
void	setSequenceFeature(SequenceFeature sequenceFeature)
void	setSingleResidue(boolean singleResidue)
IDataTransferModel	toDataTransferObject()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationLocation

public AnnotationLocation()

AnnotationLocation

public AnnotationLocation(int genbankStart,
                          int end,
                          SequenceFeature sequenceFeature)

Method Detail

setId

public void setId(long id)

getId

public long getId()

Specified by:

getId in interface DataModel

setGenbankStart

public void setGenbankStart(int genbankStart)

getGenbankStart

public int getGenbankStart()

setEnd

public void setEnd(int end)

getEnd

public int getEnd()

setSingleResidue

public void setSingleResidue(boolean singleResidue)

isSingleResidue

public boolean isSingleResidue()

setInbetween

public void setInbetween(boolean inbetween)

isInbetween

public boolean isInbetween()

setSequenceFeature

public void setSequenceFeature(SequenceFeature sequenceFeature)

getSequenceFeature

public SequenceFeature getSequenceFeature()

toDataTransferObject

public IDataTransferModel toDataTransferObject()

Specified by:

toDataTransferObject in interface DataModel