org.jbei.ice.storage.model

Class TraceSequence

java.lang.Object

org.jbei.ice.storage.model.TraceSequence

All Implemented Interfaces:

DataModel

@Entity
public class TraceSequence
extends Object
implements DataModel

Store sequence trace file information.

Author:

Zinovii Dmytriv, Timothy Ham

Constructor Summary

Constructors

Constructor and Description
TraceSequence()
TraceSequence(Entry entry, String fileId, String filename, String depositor, String sequence, Date creationTime)

Method Summary

Modifier and Type	Method and Description
Date	getCreationTime()
String	getDepositor()
Entry	getEntry()
String	getFileId()
String	getFilename()
long	getId()
String	getSequence()
TraceSequenceAlignment	getTraceSequenceAlignment()
void	setCreationTime(Date creationTime)
void	setDepositor(String depositor)
void	setEntry(Entry entry)
void	setFileId(String fileId)
void	setFilename(String filename)
void	setId(long id)
void	setSequence(String sequence)
void	setTraceSequenceAlignment(TraceSequenceAlignment traceSequenceAlignment)
TraceSequenceAnalysis	toDataTransferObject()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TraceSequence

public TraceSequence()

TraceSequence

public TraceSequence(Entry entry,
                     String fileId,
                     String filename,
                     String depositor,
                     String sequence,
                     Date creationTime)

Method Detail

getId

public long getId()

Specified by:

getId in interface DataModel

setId

public void setId(long id)

getEntry

public Entry getEntry()

setEntry

public void setEntry(Entry entry)

getFileId

public String getFileId()

setFileId

public void setFileId(String fileId)

getFilename

public String getFilename()

setFilename

public void setFilename(String filename)

getDepositor

public String getDepositor()

setDepositor

public void setDepositor(String depositor)

getSequence

public String getSequence()

setSequence

public void setSequence(String sequence)

getTraceSequenceAlignment

public TraceSequenceAlignment getTraceSequenceAlignment()

setTraceSequenceAlignment

public void setTraceSequenceAlignment(TraceSequenceAlignment traceSequenceAlignment)

getCreationTime

public Date getCreationTime()

setCreationTime

public void setCreationTime(Date creationTime)

toDataTransferObject

public TraceSequenceAnalysis toDataTransferObject()

Specified by:

toDataTransferObject in interface DataModel