org.jbei.ice.storage.hibernate.dao

Class ShotgunSequenceDAO

java.lang.Object

org.jbei.ice.storage.hibernate.HibernateRepository<ShotgunSequence>

org.jbei.ice.storage.hibernate.dao.ShotgunSequenceDAO

All Implemented Interfaces:

IRepository<ShotgunSequence>

public class ShotgunSequenceDAO
extends HibernateRepository<ShotgunSequence>

Field Summary

Fields

Modifier and Type	Field and Description
static String	SHOTGUN_SEQUENCES_DIR

Constructor Summary

Constructors

Constructor and Description
ShotgunSequenceDAO()

Method Summary

Modifier and Type	Method and Description
ShotgunSequence	create(String fileName, String depositor, Entry entry, String fileUUID, Date date)
void	delete(Path dir, ShotgunSequence shotgunSequence)
ShotgunSequence	get(long id)
List<ShotgunSequence>	getByEntry(Entry entry)
ShotgunSequence	getByFileId(String fileId)
File	getFile(String fileId)
int	getShotgunSequenceCount(Entry entry)
void	writeSequenceFileToDisk(String fileName, InputStream inputStream)

Methods inherited from class org.jbei.ice.storage.hibernate.HibernateRepository

create, currentSession, delete, get, getBuilder, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SHOTGUN_SEQUENCES_DIR

public static final String SHOTGUN_SEQUENCES_DIR

See Also:

Constant Field Values

Constructor Detail

ShotgunSequenceDAO

public ShotgunSequenceDAO()

Method Detail

create

public ShotgunSequence create(String fileName,
                              String depositor,
                              Entry entry,
                              String fileUUID,
                              Date date)

writeSequenceFileToDisk

public void writeSequenceFileToDisk(String fileName,
                                    InputStream inputStream)
                             throws IOException

Throws:

IOException

getByEntry

public List<ShotgunSequence> getByEntry(Entry entry)

getFile

public File getFile(String fileId)

getByFileId

public ShotgunSequence getByFileId(String fileId)

getShotgunSequenceCount

public int getShotgunSequenceCount(Entry entry)

delete

public void delete(Path dir,
                   ShotgunSequence shotgunSequence)

get

public ShotgunSequence get(long id)