Uses of Package
org.jbei.ice.storage.model

Packages that use org.jbei.ice.storage.model

Package	Description
org.jbei.ice.lib.access	Permissions related classes.
org.jbei.ice.lib.account
org.jbei.ice.lib.account.authentication	Authentication classes.
org.jbei.ice.lib.bulkupload
org.jbei.ice.lib.config
org.jbei.ice.lib.dto	Value Objects classes.
org.jbei.ice.lib.dto.folder
org.jbei.ice.lib.entry
org.jbei.ice.lib.entry.attachment
org.jbei.ice.lib.entry.sample
org.jbei.ice.lib.entry.sequence
org.jbei.ice.lib.entry.sequence.composers.formatters	Formatters for various sequence file formats.
org.jbei.ice.lib.entry.sequence.composers.pigeon
org.jbei.ice.lib.folder
org.jbei.ice.lib.folder.collection
org.jbei.ice.lib.group
org.jbei.ice.lib.manuscript
org.jbei.ice.lib.message
org.jbei.ice.lib.net
org.jbei.ice.lib.parsers	Parsers for different file formats.
org.jbei.ice.lib.parsers.sbol
org.jbei.ice.lib.search
org.jbei.ice.lib.utils	Non-web related utility classes.
org.jbei.ice.servlet
org.jbei.ice.storage	Database access classes.
org.jbei.ice.storage.hibernate.dao
org.jbei.ice.storage.model	Data models for ice objects.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.access

Class and Description
Account Store the account information for a single user.
BulkUpload Saved draft of bulk imports.
Entry Entry class is the most important class in gd-ice.
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.
Group Aggregate users into groups.
Permission Permission object for storing permissions related to either folders or entries on an account or group basis
RemoteAccessModel Stores access information for remote shares
RemoteClientModel Abstract notion of a client.
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.account

Class and Description
Account Store the account information for a single user.
Preference Entity for storing user preferences.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.account.authentication

Class and Description
Account Store the account information for a single user.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.bulkupload

Class and Description
Account Store the account information for a single user.
BulkUpload Saved draft of bulk imports.
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.config

Class and Description
Configuration Site wide configuration values.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.dto

Class and Description
ShotgunSequence

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.dto.folder

Class and Description
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry

Class and Description
Account Store the account information for a single user.
ArabidopsisSeed Store Arabidopsis Seed specific fields.
Entry Entry class is the most important class in gd-ice.
Group Aggregate users into groups.
Link Store url link information.
Plasmid Store Plasmid specific fields.
SelectionMarker Represents a selection marker for entry.
Strain Store Strain specific fields.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry.attachment

Class and Description
Attachment Store information about attachments.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry.sample

Class and Description
Sample Store Sample information.
Storage Store sample storage location information as well as the hierarchical structure information.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry.sequence

Class and Description
Entry Entry class is the most important class in gd-ice.
Sequence Stores the unique sequence for an Entry object.
ShotgunSequence
TraceSequence Store sequence trace file information.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry.sequence.composers.formatters

Class and Description
Sequence Stores the unique sequence for an Entry object.
SequenceFeature Stores the sequence annotation information, and associates Feature objects to a Sequence object.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.entry.sequence.composers.pigeon

Class and Description
Sequence Stores the unique sequence for an Entry object.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.folder

Class and Description
Account Store the account information for a single user.
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.
Permission Permission object for storing permissions related to either folders or entries on an account or group basis
RemoteClientModel Abstract notion of a client.
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.
RemoteShareModel Stores shares for entries or folders.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.folder.collection

Class and Description
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.group

Class and Description
Account Store the account information for a single user.
Group Aggregate users into groups.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.manuscript

Class and Description
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.message

Class and Description
Account Store the account information for a single user.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.net

Class and Description
Entry Entry class is the most important class in gd-ice.
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.parsers

Class and Description
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.parsers.sbol

Class and Description
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.search

Class and Description
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.lib.utils

Class and Description
Part Store Part specific fields.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.servlet

Class and Description
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.storage

Class and Description
Attachment Store information about attachments.
Entry Entry class is the most important class in gd-ice.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.storage.hibernate.dao

Class and Description
Account Store the account information for a single user.
ApiKey
Attachment Store information about attachments.
Audit Audit object for keep track of actions affecting entries.
BulkUpload Saved draft of bulk imports.
Comment Store comments about an Entry object, with the associated .lib.account.model.Account.
Configuration Site wide configuration values.
Entry Entry class is the most important class in gd-ice.
Experiment Storage entity for experimental data
Feature Represents a unique sequence annotation known to this instance of gd-ice.
FeatureCurationModel
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.
Group Aggregate users into groups.
ManuscriptModel
Message Encapsulates system and user messages which can be sent to groups or individuals.
Parameter Stores key-value information for Entry.
Permission Permission object for storing permissions related to either folders or entries on an account or group basis
Preference Entity for storing user preferences.
RemoteAccessModel Stores access information for remote shares
RemoteClientModel Abstract notion of a client.
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.
RemoteShareModel Stores shares for entries or folders.
Request Storage data model for sample requests
Sample Store Sample information.
SelectionMarker Represents a selection marker for entry.
Sequence Stores the unique sequence for an Entry object.
SequenceFeature Stores the sequence annotation information, and associates Feature objects to a Sequence object.
ShotgunSequence
Storage Store sample storage location information as well as the hierarchical structure information.
TraceSequence Store sequence trace file information.

Classes in org.jbei.ice.storage.model used by org.jbei.ice.storage.model

Class and Description
Account Store the account information for a single user.
AnnotationLocation Store the basepair location annotation for a SequenceFeature object.
Attachment Store information about attachments.
BulkUpload Saved draft of bulk imports.
Comment Store comments about an Entry object, with the associated .lib.account.model.Account.
Entry Entry class is the most important class in gd-ice.
Feature Represents a unique sequence annotation known to this instance of gd-ice.
FeatureCurationModel
Folder Encapsulates the notion of a collection of Entrys Each folder has an owner.
Group Aggregate users into groups.
Link Store url link information.
Parameter Stores key-value information for Entry.
Part.AssemblyStandard
Permission Permission object for storing permissions related to either folders or entries on an account or group basis
RemoteClientModel Abstract notion of a client.
RemotePartner Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.
RemoteShareModel Stores shares for entries or folders.
Sample Store Sample information.
SelectionMarker Represents a selection marker for entry.
Sequence Stores the unique sequence for an Entry object.
SequenceFeature Stores the sequence annotation information, and associates Feature objects to a Sequence object.
SequenceFeature.AnnotationType Annotation type for "parts".
SequenceFeatureAttribute Store genbank style attributes.
Storage Store sample storage location information as well as the hierarchical structure information.
Storage.StorageType
TraceSequence Store sequence trace file information.
TraceSequenceAlignment Store computed trace alignment information.