Package org.jbei.ice.storage.model

Data models for ice objects.

See: Description

Class Summary

Class	Description
Account	Store the account information for a single user.
AccountPreferences	Store preferences for a user for an Account object.
AnnotationLocation	Store the basepair location annotation for a SequenceFeature object.
ApiKey
ArabidopsisSeed	Store Arabidopsis Seed specific fields.
Attachment	Store information about attachments.
Audit	Audit object for keep track of actions affecting entries.
BulkUpload	Saved draft of bulk imports.
Comment	Store comments about an Entry object, with the associated .lib.account.model.Account.
Configuration	Site wide configuration values.
Entry	Entry class is the most important class in gd-ice.
Experiment	Storage entity for experimental data
Feature	Represents a unique sequence annotation known to this instance of gd-ice.
FeatureCurationModel
Folder	Encapsulates the notion of a collection of Entrys Each folder has an owner.
Group	Aggregate users into groups.
Link	Store url link information.
ManuscriptModel
Message	Encapsulates system and user messages which can be sent to groups or individuals.
Parameter	Stores key-value information for Entry.
Part	Store Part specific fields.
Permission	Permission object for storing permissions related to either folders or entries on an account or group basis
Plasmid	Store Plasmid specific fields.
Preference	Entity for storing user preferences.
RemoteAccessModel	Stores access information for remote shares
RemoteClientModel	Abstract notion of a client.
RemotePartner	Represents a remote entity that this ice instance knows about and could potentially communicate with or allow communications from Field Descriptions: NAME: Name of the remote instance for display purposes. URL: Unique resource locator for the partner.
RemoteShareModel	Stores shares for entries or folders.
Request	Storage data model for sample requests
Sample	Store Sample information.
SelectionMarker	Represents a selection marker for entry.
Sequence	Stores the unique sequence for an Entry object.
SequenceFeature	Stores the sequence annotation information, and associates Feature objects to a Sequence object.
SequenceFeatureAttribute	Store genbank style attributes.
ShotgunSequence
Storage	Store sample storage location information as well as the hierarchical structure information.
Strain	Store Strain specific fields.
TraceSequence	Store sequence trace file information.
TraceSequenceAlignment	Store computed trace alignment information.

Enum Summary

Enum	Description
Part.AssemblyStandard
SequenceFeature.AnnotationType	Annotation type for "parts".
Storage.StorageType

Package org.jbei.ice.storage.model Description

Data models for ice objects.

Models here represent the core data representation used by ice. The us JPA to make the underlying tables that are created from them (e.g. using hibernate) to not have to rely on specific libraries at runtime