| org.jbei.auth |
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| org.jbei.auth.hmac |
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| org.jbei.ice |
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| org.jbei.ice.lib.access |
Permissions related classes.
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| org.jbei.ice.lib.account |
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| org.jbei.ice.lib.account.authentication |
Authentication classes.
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| org.jbei.ice.lib.bulkupload |
|
| org.jbei.ice.lib.common.logging |
Logging facilities.
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| org.jbei.ice.lib.config |
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| org.jbei.ice.lib.dto |
Value Objects classes.
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| org.jbei.ice.lib.dto.access |
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| org.jbei.ice.lib.dto.bulkupload |
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| org.jbei.ice.lib.dto.comment |
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| org.jbei.ice.lib.dto.common |
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| org.jbei.ice.lib.dto.entry |
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| org.jbei.ice.lib.dto.folder |
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| org.jbei.ice.lib.dto.group |
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| org.jbei.ice.lib.dto.message |
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| org.jbei.ice.lib.dto.sample |
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| org.jbei.ice.lib.dto.search |
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| org.jbei.ice.lib.dto.user |
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| org.jbei.ice.lib.dto.web |
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| org.jbei.ice.lib.email |
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| org.jbei.ice.lib.entry |
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| org.jbei.ice.lib.entry.attachment |
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| org.jbei.ice.lib.entry.sample |
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| org.jbei.ice.lib.entry.sequence |
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| org.jbei.ice.lib.entry.sequence.annotation |
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| org.jbei.ice.lib.entry.sequence.composers |
Wrapper classes for formatted sequence generators.
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| org.jbei.ice.lib.entry.sequence.composers.formatters |
Formatters for various sequence file formats.
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| org.jbei.ice.lib.entry.sequence.composers.pigeon |
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| org.jbei.ice.lib.executor |
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| org.jbei.ice.lib.experiment |
|
| org.jbei.ice.lib.folder |
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| org.jbei.ice.lib.folder.collection |
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| org.jbei.ice.lib.group |
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| org.jbei.ice.lib.manuscript |
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| org.jbei.ice.lib.message |
|
| org.jbei.ice.lib.net |
|
| org.jbei.ice.lib.parsers |
Parsers for different file formats.
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| org.jbei.ice.lib.parsers.abi |
|
| org.jbei.ice.lib.parsers.bl2seq |
Parser for bl2seq.
|
| org.jbei.ice.lib.parsers.fasta |
Parser for fasta.
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| org.jbei.ice.lib.parsers.genbank |
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| org.jbei.ice.lib.parsers.sbol |
|
| org.jbei.ice.lib.search |
|
| org.jbei.ice.lib.search.blast |
BLAST search classes.
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| org.jbei.ice.lib.search.filter |
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| org.jbei.ice.lib.shared |
|
| org.jbei.ice.lib.utils |
Non-web related utility classes.
|
| org.jbei.ice.services.rest |
|
| org.jbei.ice.services.rest.multipart |
|
| org.jbei.ice.servlet |
|
| org.jbei.ice.servlet.filter |
|
| org.jbei.ice.storage |
Database access classes.
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| org.jbei.ice.storage.hibernate |
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| org.jbei.ice.storage.hibernate.bridge |
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| org.jbei.ice.storage.hibernate.dao |
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| org.jbei.ice.storage.hibernate.filter |
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| org.jbei.ice.storage.hibernate.search |
|
| org.jbei.ice.storage.model |
Data models for ice objects.
|