Uses of Class
org.jbei.ice.storage.model.Group

Packages that use Group

Package	Description
org.jbei.ice.lib.access	Permissions related classes.
org.jbei.ice.lib.entry
org.jbei.ice.lib.group
org.jbei.ice.storage.hibernate.dao
org.jbei.ice.storage.model	Data models for ice objects.

Uses of Group in org.jbei.ice.lib.access

Method parameters in org.jbei.ice.lib.access with type arguments of type Group

Modifier and Type	Method and Description
boolean	PermissionsController.groupHasReadPermission(List<Group> groups, Set<Folder> folders)
boolean	PermissionsController.groupHasWritePermission(List<Group> groups, Set<Folder> folders)

Uses of Group in org.jbei.ice.lib.entry

Methods in org.jbei.ice.lib.entry with parameters of type Group

Modifier and Type	Method and Description
protected void	EntryCreator.addReadPermission(Account account, Group group, Entry entry)

Uses of Group in org.jbei.ice.lib.group

Methods in org.jbei.ice.lib.group that return Group

Modifier and Type	Method and Description
Group	GroupController.createOrRetrievePublicGroup()
Group	GroupController.save(Group group)

Methods in org.jbei.ice.lib.group that return types with arguments of type Group

Modifier and Type	Method and Description
List<Group>	GroupController.getAllGroups(Account account) retrieves all parent groups for any group in the set.
ArrayList<Group>	GroupController.getAllPublicGroupsForAccount(Account account)
List<Group>	GroupController.getMatchingGroups(String userId, String query, int limit)

Methods in org.jbei.ice.lib.group with parameters of type Group

Modifier and Type	Method and Description
Group	GroupController.save(Group group)
protected void	Groups.setGroupMembers(Group group, List<AccountTransfer> members, List<RemoteUser> remoteUsers)

Uses of Group in org.jbei.ice.storage.hibernate.dao

Methods in org.jbei.ice.storage.hibernate.dao that return Group

Modifier and Type	Method and Description
Group	GroupDAO.get(long id) Retrieve Group object from the database by its id.
Group	GroupDAO.getByUUID(String uuid) Retrieve Group object from the database by its uuid.

Methods in org.jbei.ice.storage.hibernate.dao that return types with arguments of type Group

Modifier and Type	Method and Description
List<Group>	GroupDAO.getGroupsBy(GroupType type, boolean isAutoJoin) Retrieves groups by type and autoJoin value
List<Group>	GroupDAO.getGroupsByType(GroupType type, int offset, int limit)
List<Group>	GroupDAO.getMatchingGroups(Account account, String token, int limit)
List<Group>	PermissionDAO.retrieveGroupPermissions(Folder folder, boolean canWrite, boolean canRead)
List<Group>	GroupDAO.retrieveMemberGroups(Account account)

Methods in org.jbei.ice.storage.hibernate.dao with parameters of type Group

Modifier and Type	Method and Description
int	PermissionDAO.clearPermissions(Group group)
protected org.hibernate.query.Query<Permission>	PermissionDAO.createPermissionQuery(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
int	RemoteClientModelDAO.getClientCount(Group group) Retrieves number of clients for the specified group
List<RemoteClientModel>	RemoteClientModelDAO.getClientsForGroup(Group group) Retrieves clients belonging to specified group
List<Folder>	PermissionDAO.getFolders(Group group)
List<Long>	EntryDAO.getVisibleEntryIds(boolean admin, Group publicGroup)
boolean	PermissionDAO.hasPermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
int	PermissionDAO.removePermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
Permission	PermissionDAO.retrievePermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)

Method parameters in org.jbei.ice.storage.hibernate.dao with type arguments of type Group

Modifier and Type	Method and Description
List<Folder>	FolderDAO.getCanEditFolders(Account account, Set<Group> accountGroups) Retrieves folders that the specified account owns, or has write privileges on based on the permissions
List<Long>	PermissionDAO.getCanReadEntries(Account account, List<Group> groups, List<Long> entries) Filters the given list, removing those that the specified account does not have read privileges on // todo : this doesn't check permissions from folder (get list of all folders entries are in)
List<SequenceFeature>	SequenceFeatureDAO.getSequenceFeatures(String userId, List<Group> groups, String nameFilter, int start, int limit)
int	SequenceFeatureDAO.getSequenceFeaturesCount(String userId, List<Group> groups, String nameFilter)
boolean	PermissionDAO.hasPermissionMulti(Entry entry, Set<Folder> folders, Account account, List<Group> groups, boolean canRead, boolean canWrite)
long	EntryDAO.ownerEntryCount(Account requester, String ownerEmail, Set<Group> accountGroups)
List<Folder>	PermissionDAO.retrieveFolderPermissions(Account account, Set<Group> accountGroups)
int	MessageDAO.retrieveMessageCount(Account account, List<Group> groups)
List<Message>	MessageDAO.retrieveMessages(Account account, List<Group> groups, int start, int count)
List<Entry>	EntryDAO.retrieveUserEntries(Account requester, String owner, Set<Group> requesterGroups, ColumnField sortField, boolean asc, int start, int limit, String filter) Retrieves the entries for the specified owner, that the requester has read access to
List<Entry>	EntryDAO.retrieveVisibleEntries(Account account, Set<Group> groups, ColumnField sortField, boolean asc, int start, int count, String filter) Retrieve Entries visible to everyone.
long	EntryDAO.sharedEntryCount(Account requester, Set<Group> accountGroups, String filter) An entry is shared if requester has explicit read or write permissions of belongs to a group that have explicit read or write permissions
List<Entry>	EntryDAO.sharedWithUserEntries(Account requester, Set<Group> accountGroups, ColumnField sort, boolean asc, int start, int limit, String filter)
List<Long>	EntryDAO.sharedWithUserEntryIds(Account account, Set<Group> groups)
long	EntryDAO.visibleEntryCount(Account account, Set<Group> groups, String filter)

Uses of Group in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return Group

Modifier and Type	Method and Description
Group	Permission.getGroup()

Methods in org.jbei.ice.storage.model that return types with arguments of type Group

Modifier and Type	Method and Description
Set<Group>	Message.getDestinationGroups()
Set<Group>	Account.getGroups()
Set<Group>	RemoteClientModel.getGroups()

Methods in org.jbei.ice.storage.model with parameters of type Group

Modifier and Type	Method and Description
void	Permission.setGroup(Group group)

Method parameters in org.jbei.ice.storage.model with type arguments of type Group

Modifier and Type	Method and Description
void	Message.setDestinationGroups(HashSet<Group> destinationGroups)