Uses of Class
org.jbei.ice.storage.model.Account

Packages that use Account

Package	Description
org.jbei.ice.lib.access	Permissions related classes.
org.jbei.ice.lib.account
org.jbei.ice.lib.account.authentication	Authentication classes.
org.jbei.ice.lib.bulkupload
org.jbei.ice.lib.entry
org.jbei.ice.lib.folder
org.jbei.ice.lib.group
org.jbei.ice.lib.message
org.jbei.ice.storage.hibernate.dao
org.jbei.ice.storage.model	Data models for ice objects.

Uses of Account in org.jbei.ice.lib.access

Methods in org.jbei.ice.lib.access that return Account

Modifier and Type	Method and Description
protected Account	Authorization.getAccount(String userId)

Methods in org.jbei.ice.lib.access with parameters of type Account

Modifier and Type	Method and Description
boolean	PermissionsController.accountHasReadPermission(Account account, Set<Folder> folders)
boolean	PermissionsController.accountHasWritePermission(Account account, Set<Folder> folders)
protected Permission	RemoteAccess.createPermissionModel(AccessPermission accessPermission, Folder folder, Account account)

Uses of Account in org.jbei.ice.lib.account

Methods in org.jbei.ice.lib.account that return Account

Modifier and Type	Method and Description
protected Account	AccountController.authenticate(String login, String password, String ip) Authenticate a user in the database.
Account	AccountController.createAdminAccount()
static Account	AccountUtils.fromDTO(AccountTransfer info)
Account	AccountController.getByEmail(String email) Retrieve Account by user id.
Account	AccountController.save(Account account) Store Account into the database.

Methods in org.jbei.ice.lib.account with parameters of type Account

Modifier and Type	Method and Description
Preference	PreferencesController.createPreference(Account account, String key, String value)
protected long	Accounts.getNumberOfOwnerEntries(Account account, String ownerEmail)
protected boolean	Accounts.isAdministrator(Account account)
HashMap<PreferenceKey,String>	PreferencesController.retrieveAccountPreferences(Account account, ArrayList<PreferenceKey> keys)
HashMap<String,String>	PreferencesController.retrieveUserPreferenceList(Account account, List<SearchBoostField> fields)
Account	AccountController.save(Account account) Store Account into the database.

Uses of Account in org.jbei.ice.lib.account.authentication

Methods in org.jbei.ice.lib.account.authentication with parameters of type Account

Modifier and Type	Method and Description
protected boolean	LocalAuthentication.isValidPassword(Account account, String password) Check if the given password is valid for the account.

Uses of Account in org.jbei.ice.lib.bulkupload

Methods in org.jbei.ice.lib.bulkupload with parameters of type Account

Modifier and Type	Method and Description
protected void	BulkEntryCreator.addWritePermission(Account account, Entry entry)
protected BulkUpload	BulkEntryCreator.createOrRetrieveBulkUpload(Account account, BulkUploadAutoUpdate autoUpdate, EntryType addType)
boolean	BulkUploadController.revertSubmitted(Account account, long uploadId)

Uses of Account in org.jbei.ice.lib.entry

Methods in org.jbei.ice.lib.entry with parameters of type Account

Modifier and Type	Method and Description
protected void	EntryCreator.addReadPermission(Account account, Group group, Entry entry)
protected void	EntryCreator.addWritePermission(Account account, Entry entry)
Entry	EntryCreator.createEntry(Account account, Entry entry, ArrayList<AccessPermission> accessPermissions) Create an entry in the database.

Uses of Account in org.jbei.ice.lib.folder

Methods in org.jbei.ice.lib.folder that return Account

Modifier and Type	Method and Description
protected Account	FolderController.getAccount(String userId)

Methods in org.jbei.ice.lib.folder with parameters of type Account

Modifier and Type	Method and Description
protected void	FolderContents.addToRemoteFolder(Account account, Folder folder, List<Long> entries)

Uses of Account in org.jbei.ice.lib.group

Methods in org.jbei.ice.lib.group with parameters of type Account

Modifier and Type	Method and Description
List<Group>	GroupController.getAllGroups(Account account) retrieves all parent groups for any group in the set.
ArrayList<Group>	GroupController.getAllPublicGroupsForAccount(Account account)

Uses of Account in org.jbei.ice.lib.message

Methods in org.jbei.ice.lib.message with parameters of type Account

Modifier and Type	Method and Description
int	Messages.getNewMessageCount(Account account)

Uses of Account in org.jbei.ice.storage.hibernate.dao

Methods in org.jbei.ice.storage.hibernate.dao that return Account

Modifier and Type	Method and Description
Account	AccountDAO.get(long id) Retrieve Account by id from the database.
Account	AccountDAO.getByEmail(String email) Retrieve an Account by the email field.

Methods in org.jbei.ice.storage.hibernate.dao that return types with arguments of type Account

Modifier and Type	Method and Description
List<Account>	AccountDAO.getAccounts(int offset, int limit, String sort, boolean asc, String filter) Retrieves list of pageable accounts, matching the parameter values
List<Account>	AccountDAO.getMatchingAccounts(String token, int limit) Retrieves accounts whose firstName, lastName, or email fields match the specified token up to the specified limit.
List<Account>	PermissionDAO.retrieveAccountPermissions(Folder folder, boolean canWrite, boolean canRead)

Methods in org.jbei.ice.storage.hibernate.dao with parameters of type Account

Modifier and Type	Method and Description
Preference	PreferencesDAO.createOrUpdatePreference(Account account, String key, String value)
protected org.hibernate.query.Query<Permission>	PermissionDAO.createPermissionQuery(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
List<Preference>	PreferencesDAO.getAccountPreferences(Account account, List<PreferenceKey> keys)
List<Request>	RequestDAO.getAccountRequests(Account account, SampleRequestStatus status, int start, int limit, String sort, boolean asc)
RemoteAccessModel	RemoteAccessModelDAO.getByFolder(Account account, Folder folder)
List<Folder>	FolderDAO.getCanEditFolders(Account account, Set<Group> accountGroups) Retrieves folders that the specified account owns, or has write privileges on based on the permissions
List<Long>	PermissionDAO.getCanReadEntries(Account account, List<Group> groups, List<Long> entries) Filters the given list, removing those that the specified account does not have read privileges on // todo : this doesn't check permissions from folder (get list of all folders entries are in)
int	RequestDAO.getCount(Account account)
List<Folder>	FolderDAO.getFoldersByOwner(Account account) Retrieve all Folders owned by given the Account.
List<Group>	GroupDAO.getMatchingGroups(Account account, String token, int limit)
List<String>	GroupDAO.getMemberGroupUUIDs(Account account) Retrieves all UUIDs that the specified account either owns or is a member of
Preference	PreferencesDAO.getPreference(Account account, String key)
List<Request>	RequestDAO.getSampleRequestByStatus(Account account, Entry entry, SampleRequestStatus status)
Request	RequestDAO.getSampleRequestInCart(Account account, Entry entry)
boolean	PermissionDAO.hasPermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
boolean	PermissionDAO.hasPermissionMulti(Entry entry, Set<Folder> folders, Account account, List<Group> groups, boolean canRead, boolean canWrite)
boolean	PermissionDAO.hasSetWriteFolderPermission(Folder folder, Account account)
long	EntryDAO.ownerEntryCount(Account requester, String ownerEmail, Set<Group> accountGroups)
int	PermissionDAO.removePermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
List<BulkUpload>	BulkUploadDAO.retrieveByAccount(Account account)
List<Folder>	PermissionDAO.retrieveFolderPermissions(Account account, Set<Group> accountGroups)
List<Group>	GroupDAO.retrieveMemberGroups(Account account)
int	MessageDAO.retrieveMessageCount(Account account, List<Group> groups)
List<Message>	MessageDAO.retrieveMessages(Account account, List<Group> groups, int start, int count)
int	MessageDAO.retrieveNewMessageCount(Account account)
Permission	PermissionDAO.retrievePermission(Entry entry, Folder folder, BulkUpload upload, Account account, Group group, boolean canRead, boolean canWrite)
HashMap<String,String>	PreferencesDAO.retrievePreferenceValues(Account account, HashSet<String> keys)
List<Entry>	EntryDAO.retrieveUserEntries(Account requester, String owner, Set<Group> requesterGroups, ColumnField sortField, boolean asc, int start, int limit, String filter) Retrieves the entries for the specified owner, that the requester has read access to
List<Entry>	EntryDAO.retrieveVisibleEntries(Account account, Set<Group> groups, ColumnField sortField, boolean asc, int start, int count, String filter) Retrieve Entries visible to everyone.
long	EntryDAO.sharedEntryCount(Account requester, Set<Group> accountGroups, String filter) An entry is shared if requester has explicit read or write permissions of belongs to a group that have explicit read or write permissions
List<Entry>	EntryDAO.sharedWithUserEntries(Account requester, Set<Group> accountGroups, ColumnField sort, boolean asc, int start, int limit, String filter)
List<Long>	EntryDAO.sharedWithUserEntryIds(Account account, Set<Group> groups)
long	EntryDAO.visibleEntryCount(Account account, Set<Group> groups, String filter)

Uses of Account in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return Account

Modifier and Type	Method and Description
Account	Comment.getAccount()
Account	AccountPreferences.getAccount()
Account	Request.getAccount()
Account	Permission.getAccount()
Account	BulkUpload.getAccount()
Account	Preference.getAccount()
Account	Group.getOwner()
Account	RemoteShareModel.getSharer()

Methods in org.jbei.ice.storage.model that return types with arguments of type Account

Modifier and Type	Method and Description
Set<Account>	Message.getDestinationAccounts()
Set<Account>	Group.getMembers()

Methods in org.jbei.ice.storage.model with parameters of type Account

Modifier and Type	Method and Description
void	Comment.setAccount(Account account)
void	AccountPreferences.setAccount(Account account)
void	Request.setAccount(Account account)
void	Permission.setAccount(Account account)
void	BulkUpload.setAccount(Account account)
void	Preference.setAccount(Account account)
void	Group.setOwner(Account owner)
void	RemoteShareModel.setSharer(Account sharer)

Method parameters in org.jbei.ice.storage.model with type arguments of type Account

Modifier and Type	Method and Description
void	Message.setDestinationAccounts(HashSet<Account> destinationAccounts)

Constructors in org.jbei.ice.storage.model with parameters of type Account

Constructor and Description
Comment(Entry entry, Account account, String body)
Preference(Account account, String key, String value)