Uses of Interface
org.jbei.ice.storage.IDataTransferModel

Packages that use IDataTransferModel

Package	Description
org.jbei.ice.lib.access	Permissions related classes.
org.jbei.ice.lib.account
org.jbei.ice.lib.bulkupload
org.jbei.ice.lib.config
org.jbei.ice.lib.dto	Value Objects classes.
org.jbei.ice.lib.dto.access
org.jbei.ice.lib.dto.bulkupload
org.jbei.ice.lib.dto.comment
org.jbei.ice.lib.dto.common
org.jbei.ice.lib.dto.entry
org.jbei.ice.lib.dto.folder
org.jbei.ice.lib.dto.group
org.jbei.ice.lib.dto.message
org.jbei.ice.lib.dto.sample
org.jbei.ice.lib.dto.search
org.jbei.ice.lib.dto.user
org.jbei.ice.lib.dto.web
org.jbei.ice.lib.entry
org.jbei.ice.lib.experiment
org.jbei.ice.lib.folder
org.jbei.ice.lib.manuscript
org.jbei.ice.lib.search
org.jbei.ice.lib.shared
org.jbei.ice.services.rest
org.jbei.ice.storage	Database access classes.
org.jbei.ice.storage.model	Data models for ice objects.

Uses of IDataTransferModel in org.jbei.ice.lib.access

Methods in org.jbei.ice.lib.access that return IDataTransferModel

Modifier and Type	Method and Description
IDataTransferModel	Authorization.get(String userId, long id)

Uses of IDataTransferModel in org.jbei.ice.lib.account

Classes in org.jbei.ice.lib.account that implement IDataTransferModel

Modifier and Type	Class and Description
class	AccountTransfer Data transfer object for user account
class	AccountType Type of account managed by the system

Uses of IDataTransferModel in org.jbei.ice.lib.bulkupload

Classes in org.jbei.ice.lib.bulkupload that implement IDataTransferModel

Modifier and Type	Class and Description
class	BulkUploadAutoUpdate Data model for bulk upload auto updates
class	BulkUploadInfo Data transfer model for bulk upload.
class	BulkUploadStatus Status used to indicate whether a bulk upload is pending approval or still being worked on.
class	ProcessedBulkUpload Represents the results of a processed upload.

Uses of IDataTransferModel in org.jbei.ice.lib.config

Classes in org.jbei.ice.lib.config that implement IDataTransferModel

Modifier and Type	Class and Description
class	SiteSettings Settings for the site

Uses of IDataTransferModel in org.jbei.ice.lib.dto

Classes in org.jbei.ice.lib.dto that implement IDataTransferModel

Modifier and Type	Class and Description
class	AccountResults Wrapper around a list of user accounts
class	ConfigurationKey Types of configuration stored in the database.
class	Curation
class	DNAFeature Data transfer object for Sequence Features
class	DNAFeatureLocation Value object to hold AnnotationLocation data.
class	DNAFeatureNote Value object to hold SequenceFeatureAttribute data.
class	DNAFeatures Wrapper around a list of DNAFeatures that have the same label
class	DNASequence Value object to hold DNA sequence.
class	FeaturedDNASequence Value object to hold DNAFeatures and some genbank file information.
class	History
class	Setting POJO for site-wide Configuration setting
class	ShotgunSequenceDTO
class	StorageLocation Storage location information that specifies display (which can be a unique identifier) and the location type (e.g.

Uses of IDataTransferModel in org.jbei.ice.lib.dto.access

Classes in org.jbei.ice.lib.dto.access that implement IDataTransferModel

Modifier and Type	Class and Description
class	AccessKey
class	AccessPermission Data transfer object for permissions
static class	AccessPermission.Article
static class	AccessPermission.Type
class	RemoteAccessPermission Access permission for remote access.

Uses of IDataTransferModel in org.jbei.ice.lib.dto.bulkupload

Classes in org.jbei.ice.lib.dto.bulkupload that implement IDataTransferModel

Modifier and Type	Class and Description
class	EditMode Sheet edit mode that is used to determine the sheet view to show to users
class	PreferenceInfo DTO for preferences

Uses of IDataTransferModel in org.jbei.ice.lib.dto.comment

Classes in org.jbei.ice.lib.dto.comment that implement IDataTransferModel

Modifier and Type	Class and Description
class	UserComment Comments are tied to specific entries and the entryId field is used to uniquely identify the entry this comment is tied to

Uses of IDataTransferModel in org.jbei.ice.lib.dto.common

Classes in org.jbei.ice.lib.dto.common with type parameters of type IDataTransferModel

Modifier and Type	Class and Description
class	Results<T extends IDataTransferModel> Wrapper around a list of data transfer models in response to a paging request

Classes in org.jbei.ice.lib.dto.common that implement IDataTransferModel

Modifier and Type	Class and Description
class	Results<T extends IDataTransferModel> Wrapper around a list of data transfer models in response to a paging request

Uses of IDataTransferModel in org.jbei.ice.lib.dto.entry

Classes in org.jbei.ice.lib.dto.entry that implement IDataTransferModel

Modifier and Type	Class and Description
class	ArabidopsisSeedData
class	AttachmentInfo
class	CustomField User created key/value pair fields for an entry.
class	EntryField Represents the complete list of fields for parts.
class	Generation Arabidopsis seed generation options
class	HasEntryData
class	ParsedEntryId The results of an entry identifier that was parsed in order to retrieve it.
class	PartData Data transfer object for parts and associated meta-data
class	PartInformation General information for part data
class	PartStatistics
class	PlantType Arabidopsis seed plant type
class	PlasmidData
class	SequenceInfo Data transfer object for sequence
class	StrainData
class	TraceSequenceAlignmentInfo
class	TraceSequenceAnalysis

Uses of IDataTransferModel in org.jbei.ice.lib.dto.folder

Classes in org.jbei.ice.lib.dto.folder that implement IDataTransferModel

Modifier and Type	Class and Description
class	FolderDetails Folder Transfer Object
class	FolderType Type of folder sharing, which indicates where it will be displayed and the kinds of operations that are permitted

Uses of IDataTransferModel in org.jbei.ice.lib.dto.group

Classes in org.jbei.ice.lib.dto.group that implement IDataTransferModel

Modifier and Type	Class and Description
class	UserGroup DTO for groups

Uses of IDataTransferModel in org.jbei.ice.lib.dto.message

Classes in org.jbei.ice.lib.dto.message that implement IDataTransferModel

Modifier and Type	Class and Description
class	MessageInfo DTO for message object

Uses of IDataTransferModel in org.jbei.ice.lib.dto.sample

Classes in org.jbei.ice.lib.dto.sample that implement IDataTransferModel

Modifier and Type	Class and Description
class	PartSample Parent class for the different types of samples
class	SampleRequest Data transfer object for sample requests
class	SampleRequestStatus Request status for user sample request
class	SampleRequestType Available forms that the samples can be requested in
class	UserSamples Wrapper around user sample requests to include information such as the total count

Uses of IDataTransferModel in org.jbei.ice.lib.dto.search

Classes in org.jbei.ice.lib.dto.search that implement IDataTransferModel

Modifier and Type	Class and Description
class	BlastProgram Types of blast programs that this system supports for nucleotide search
class	BlastQuery Blast query.
class	FieldFilter Filter a specified entry field
class	IndexType Represents the different kinds of indexes available
class	SearchQuery
static class	SearchQuery.Parameters
class	SearchResult DTO for searches
class	SearchResults Wrapper around a list of search results which also contains information about the search.

Uses of IDataTransferModel in org.jbei.ice.lib.dto.user

Classes in org.jbei.ice.lib.dto.user that implement IDataTransferModel

Modifier and Type	Class and Description
class	UserPreferences Wrapper for user preferences

Uses of IDataTransferModel in org.jbei.ice.lib.dto.web

Classes in org.jbei.ice.lib.dto.web that implement IDataTransferModel

Modifier and Type	Class and Description
class	PartnerEntries
class	RegistryPartner Data transfer model for RemotePartner
class	RemotePartnerStatus Status for remote partners
class	RemoteUser
class	WebOfRegistries Wrapper around web of registries settings and partners

Uses of IDataTransferModel in org.jbei.ice.lib.entry

Classes in org.jbei.ice.lib.entry that implement IDataTransferModel

Modifier and Type	Class and Description
class	EntrySelection Represents entry selection in a specific context and by type (e.g.

Uses of IDataTransferModel in org.jbei.ice.lib.experiment

Classes in org.jbei.ice.lib.experiment that implement IDataTransferModel

Modifier and Type	Class and Description
class	Study Data transfer object for experiments

Uses of IDataTransferModel in org.jbei.ice.lib.folder

Classes in org.jbei.ice.lib.folder that implement IDataTransferModel

Modifier and Type	Class and Description
class	AbstractFolder Represents a grouping, in this case of folders / collections
class	CollectionCounts Wrapper around counts for collections

Uses of IDataTransferModel in org.jbei.ice.lib.manuscript

Classes in org.jbei.ice.lib.manuscript that implement IDataTransferModel

Modifier and Type	Class and Description
class	Manuscript

Uses of IDataTransferModel in org.jbei.ice.lib.search

Classes in org.jbei.ice.lib.search that implement IDataTransferModel

Modifier and Type	Class and Description
class	IndexBuildStatus
class	WebResult
class	WebSearchResults Wrapper around search results received from a remote ICE instance

Uses of IDataTransferModel in org.jbei.ice.lib.shared

Classes in org.jbei.ice.lib.shared that implement IDataTransferModel

Modifier and Type	Class and Description
class	BioSafetyOption BioSafety Option options
class	ColumnField Column fields for tables used on the ice platform UI

Uses of IDataTransferModel in org.jbei.ice.services.rest

Classes in org.jbei.ice.services.rest that implement IDataTransferModel

Modifier and Type	Class and Description
class	ErrorResponse

Methods in org.jbei.ice.services.rest that return IDataTransferModel

Modifier and Type	Method and Description
IDataTransferModel	PartDataJSONHandler.readFrom(Class<IDataTransferModel> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,String> httpHeaders, InputStream entityStream)

Methods in org.jbei.ice.services.rest that return types with arguments of type IDataTransferModel

Modifier and Type	Method and Description
ArrayList<IDataTransferModel>	ArrayDataJSONHandler.readFrom(Class<ArrayList<IDataTransferModel>> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,String> httpHeaders, InputStream entityStream)

Methods in org.jbei.ice.services.rest with parameters of type IDataTransferModel

Modifier and Type	Method and Description
long	PartDataJSONHandler.getSize(IDataTransferModel data, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType)
void	PartDataJSONHandler.writeTo(IDataTransferModel data, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,Object> httpHeaders, OutputStream entityStream)

Method parameters in org.jbei.ice.services.rest with type arguments of type IDataTransferModel

Modifier and Type	Method and Description
long	ArrayDataJSONHandler.getSize(ArrayList<IDataTransferModel> iDataTransferModels, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType)
ArrayList<IDataTransferModel>	ArrayDataJSONHandler.readFrom(Class<ArrayList<IDataTransferModel>> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,String> httpHeaders, InputStream entityStream)
IDataTransferModel	PartDataJSONHandler.readFrom(Class<IDataTransferModel> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,String> httpHeaders, InputStream entityStream)
void	ArrayDataJSONHandler.writeTo(ArrayList<IDataTransferModel> data, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,Object> httpHeaders, OutputStream entityStream)

Uses of IDataTransferModel in org.jbei.ice.storage

Methods in org.jbei.ice.storage that return IDataTransferModel

Modifier and Type	Method and Description
IDataTransferModel	DataModel.toDataTransferObject()

Uses of IDataTransferModel in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return IDataTransferModel

Modifier and Type	Method and Description
IDataTransferModel	AnnotationLocation.toDataTransferObject()
IDataTransferModel	AccountPreferences.toDataTransferObject()
IDataTransferModel	SelectionMarker.toDataTransferObject()
IDataTransferModel	Link.toDataTransferObject()
IDataTransferModel	SequenceFeatureAttribute.toDataTransferObject()