Uses of Class
org.jbei.ice.lib.dto.entry.PartData

Packages that use PartData

Package	Description
org.jbei.ice.lib.bulkupload
org.jbei.ice.lib.dto.entry
org.jbei.ice.lib.dto.sample
org.jbei.ice.lib.dto.web
org.jbei.ice.lib.entry
org.jbei.ice.lib.folder
org.jbei.ice.lib.folder.collection
org.jbei.ice.lib.net
org.jbei.ice.lib.parsers	Parsers for different file formats.
org.jbei.ice.services.rest
org.jbei.ice.servlet
org.jbei.ice.storage	Database access classes.
org.jbei.ice.storage.model	Data models for ice objects.

Uses of PartData in org.jbei.ice.lib.bulkupload

Methods in org.jbei.ice.lib.bulkupload that return PartData

Modifier and Type	Method and Description
PartData	BulkEntryCreator.createEntry(String userId, long bulkUploadId, PartData data)
protected PartData	BulkEntryCreator.createEntryForUpload(String userId, PartData data, BulkUpload upload)
protected PartData	BulkEntryCreator.doUpdate(String userId, Entry entry, PartData data)
PartData	PartWithSample.getPartData()
protected PartData	BulkUploadController.setFileData(String userId, Entry entry, PartData partData)
PartData	BulkEntryCreator.updateEntry(String userId, long bulkUploadId, long id, PartData data)

Methods in org.jbei.ice.lib.bulkupload that return types with arguments of type PartData

Modifier and Type	Method and Description
ArrayList<PartData>	BulkUploadInfo.getEntryList()

Methods in org.jbei.ice.lib.bulkupload with parameters of type PartData

Modifier and Type	Method and Description
PartData	BulkEntryCreator.createEntry(String userId, long bulkUploadId, PartData data)
protected PartData	BulkEntryCreator.createEntryForUpload(String userId, PartData data, BulkUpload upload)
protected PartData	BulkEntryCreator.doUpdate(String userId, Entry entry, PartData data)
protected void	BulkEntryCreator.saveFiles(PartData data, Entry entry, HashMap<String,InputStream> files)
protected PartData	BulkUploadController.setFileData(String userId, Entry entry, PartData partData)
PartData	BulkEntryCreator.updateEntry(String userId, long bulkUploadId, long id, PartData data)

Method parameters in org.jbei.ice.lib.bulkupload with type arguments of type PartData

Modifier and Type	Method and Description
BulkUploadInfo	BulkEntryCreator.createOrUpdateEntries(String userId, long draftId, List<PartData> data)

Constructors in org.jbei.ice.lib.bulkupload with parameters of type PartData

Constructor and Description
PartWithSample(PartSample partSample, PartData partData)

Uses of PartData in org.jbei.ice.lib.dto.entry

Methods in org.jbei.ice.lib.dto.entry that return PartData

Modifier and Type	Method and Description
PartData	HasEntryData.getEntryInfo()
PartData	ParsedEntryId.getPartData()

Methods in org.jbei.ice.lib.dto.entry that return types with arguments of type PartData

Modifier and Type	Method and Description
ArrayList<PartData>	PartData.getLinkedParts()
ArrayList<PartData>	PartData.getParents()
List<PartData>	CustomFields.getPartsByFields(String userId, List<CustomField> fields)

Methods in org.jbei.ice.lib.dto.entry with parameters of type PartData

Modifier and Type	Method and Description
void	HasEntryData.setEntryInfo(PartData view)

Constructors in org.jbei.ice.lib.dto.entry with parameters of type PartData

Constructor and Description
ParsedEntryId(String identifier, PartData partData)

Uses of PartData in org.jbei.ice.lib.dto.sample

Methods in org.jbei.ice.lib.dto.sample that return PartData

Modifier and Type	Method and Description
PartData	SampleRequest.getPartData()

Methods in org.jbei.ice.lib.dto.sample with parameters of type PartData

Modifier and Type	Method and Description
void	SampleRequest.setPartData(PartData partData)

Uses of PartData in org.jbei.ice.lib.dto.web

Methods in org.jbei.ice.lib.dto.web that return PartData

Modifier and Type	Method and Description
PartData	WebEntries.getPart(String recordId) Checks the local database for the entry with id recordId If it exists locally and is public, it returns it.

Methods in org.jbei.ice.lib.dto.web that return types with arguments of type PartData

Modifier and Type	Method and Description
Results<PartData>	PartnerEntries.getEntries()

Method parameters in org.jbei.ice.lib.dto.web with type arguments of type PartData

Modifier and Type	Method and Description
void	PartnerEntries.setEntries(Results<PartData> entries)

Constructor parameters in org.jbei.ice.lib.dto.web with type arguments of type PartData

Constructor and Description
PartnerEntries(RegistryPartner partner, Results<PartData> dataResults)

Uses of PartData in org.jbei.ice.lib.entry

Methods in org.jbei.ice.lib.entry that return PartData

Modifier and Type	Method and Description
PartData	EntryCreator.copyPart(String userId, String sourceId) Creates a copy of
PartData	EntryCreator.createPart(String userId, PartData part) Creates a new entry using the passed data
PartData	PartDefaults.get(EntryType type) Retrieves and sets the default values for the entry.
PartData	EntryController.getRequestedEntry(String remoteUserId, String token, String entryId, long folderId, RegistryPartner requestingPartner)
protected PartData	EntryController.retrieveEntryDetails(String userId, Entry entry)
PartData	EntryController.retrieveEntryDetails(String userId, String id)
PartData	EntryController.retrieveEntryTipDetails(String id)
static PartData	EntryUtil.setPartDataFromField(PartData partData, String value, EntryField field, boolean isSubType) Updates the partData based on the field that is specified.
static PartData	EntryUtil.setPartDefaults(PartData partData)

Methods in org.jbei.ice.lib.entry that return types with arguments of type PartData

Modifier and Type	Method and Description
List<PartData>	EntryLinks.get(LinkType type) Retrieves entry links that are parents or children depending on specified type
List<PartData>	EntryLinks.getChildren() Retrieves the list of children this entry, that the user has read permissions
List<PartData>	SharedEntries.getEntries(ColumnField field, boolean asc, int start, int limit, String filter)
List<PartData>	VisibleEntries.getEntries(ColumnField field, boolean asc, int start, int limit, String filter)
List<PartData>	EntryLinks.getParents() Retrieves list of this entry's parents that user has read access to
List<PartData>	EntrySelection.getRemoteEntries()
List<PartData>	OwnerEntries.retrieveOwnerEntries(ColumnField sort, boolean asc, int start, int limit, String filter)

Methods in org.jbei.ice.lib.entry with parameters of type PartData

Modifier and Type	Method and Description
boolean	EntryLinks.addLink(PartData partData, LinkType type) Adds a link for the specified entry (or creates a new entry) of the type specified
PartData	EntryCreator.createPart(String userId, PartData part) Creates a new entry using the passed data
static String	PartDataUtil.entryFieldToValue(PartData data, EntryField field)
protected static String	PartDataUtil.getCommonFieldValues(PartData data, EntryField field)
static PartData	EntryUtil.setPartDataFromField(PartData partData, String value, EntryField field, boolean isSubType) Updates the partData based on the field that is specified.
static PartData	EntryUtil.setPartDefaults(PartData partData)
long	EntryController.updatePart(String userId, long partId, PartData part) Update the information associated with the specified part. Note that any missing information will be deleted from the original entry.
static List<EntryField>	EntryUtil.validates(PartData partData) Validates the required fields in the Data Transfer Object

Method parameters in org.jbei.ice.lib.entry with type arguments of type PartData

Modifier and Type	Method and Description
boolean	EntryController.moveEntriesToTrash(String userId, ArrayList<PartData> list) Moves the specified list of entries to the deleted folder.

Uses of PartData in org.jbei.ice.lib.folder

Methods in org.jbei.ice.lib.folder that return types with arguments of type PartData

Modifier and Type	Method and Description
List<PartData>	AbstractFolder.getEntries()

Method parameters in org.jbei.ice.lib.folder with type arguments of type PartData

Modifier and Type	Method and Description
protected List<FolderDetails>	FolderContents.addRemoteEntries(String userId, List<PartData> remoteEntries, List<FolderDetails> folders)
void	AbstractFolder.setEntries(List<PartData> entries)

Uses of PartData in org.jbei.ice.lib.folder.collection

Methods in org.jbei.ice.lib.folder.collection that return PartData

Modifier and Type	Method and Description
protected PartData	Collection.setFileData(String userId, Entry entry, PartData partData)

Methods in org.jbei.ice.lib.folder.collection that return types with arguments of type PartData

Modifier and Type	Method and Description
protected Results<PartData>	CollectionEntries.getAvailableEntries(ColumnField field, boolean asc, int offset, int limit, String filter) Retrieves entries available to user.
Results<PartData>	CollectionEntries.getEntries(ColumnField field, boolean asc, int offset, int limit) Retrieves list of entries without filter text getEntries which this delegates to with null filter value
Results<PartData>	CollectionEntries.getEntries(ColumnField field, boolean asc, int offset, int limit, String filter) Retrieves parts (paged and sorted by the specified parameter values) based on the type of collection.
protected Results<PartData>	CollectionEntries.getEntriesByVisibility(Visibility visibility, ColumnField field, boolean asc, int offset, int limit, String user, String filter) Retrieves entries by the specified visibility.
protected Results<PartData>	CollectionEntries.getPersonalEntries(ColumnField field, boolean asc, int offset, int limit, String filter) Retrieves entries owned by user
protected Results<PartData>	CollectionEntries.getSharedEntries(ColumnField field, boolean asc, int offset, int limit, String filter) Retrieves entries shared with user.

Methods in org.jbei.ice.lib.folder.collection with parameters of type PartData

Modifier and Type	Method and Description
protected PartData	Collection.setFileData(String userId, Entry entry, PartData partData)

Uses of PartData in org.jbei.ice.lib.net

Methods in org.jbei.ice.lib.net that return PartData

Modifier and Type	Method and Description
PartData	RemoteEntries.getEntryDetails(String userId, long folderId, long partId)
PartData	RemoteEntries.getPublicEntry(String userId, long remoteId, long entryId)
PartData	RemoteContact.getPublicEntry(String url, String entryId, String apiKey)
PartData	RemoteEntries.getPublicEntryTooltip(String userId, long remoteId, long entryId)
PartData	RemoteContact.getPublicTooltipDetails(String url, long partId, String apiKey)
PartData	RemoteContact.getRemoteEntry(String url, String userId, long partId, long folderId, String token, String worToken)
PartData	RemoteContact.getToolTipDetails(String url, String userId, long partId, String token, String worToken)
PartData	TransferredParts.receiveTransferredEntry(PartData part)
PartData	RemoteEntries.retrieveRemoteToolTip(String userId, long folderId, long partId)
PartData	RemoteContact.transferPart(String url, PartData data)

Methods in org.jbei.ice.lib.net that return types with arguments of type PartData

Modifier and Type	Method and Description
List<PartData>	RemoteTransfer.getPartsForTransfer(List<Long> entryIds) Using the list of entry Ids, populates a list of PartData objects that maintains the hierarchical relationships

Methods in org.jbei.ice.lib.net with parameters of type PartData

Modifier and Type	Method and Description
protected void	RemoteTransfer.performTransfer(RemotePartner partner, PartData data) Transfers the sequence file for the part and any parts that are linked to it.
PartData	TransferredParts.receiveTransferredEntry(PartData part)
PartData	RemoteContact.transferPart(String url, PartData data)

Method parameters in org.jbei.ice.lib.net with type arguments of type PartData

Modifier and Type	Method and Description
List<Long>	RemoteTransfer.transferEntries(long remoteId, List<PartData> entries) Performs the transfer of the entry objects to the remote partner specified.
protected void	RemoteEntriesAsCSV.writeDataEntries(RemotePartner partner, List<PartData> entries, List<EntryField> fields, com.opencsv.CSVWriter writer, ZipOutputStream zos)

Uses of PartData in org.jbei.ice.lib.parsers

Fields in org.jbei.ice.lib.parsers declared as PartData

Modifier and Type	Field and Description
protected PartData	AbstractParser.partData

Uses of PartData in org.jbei.ice.services.rest

Methods in org.jbei.ice.services.rest that return PartData

Modifier and Type	Method and Description
PartData	PartResource.getTooltipDetails(String id, boolean isRemote, long fid) Retrieves either a remote or local tooltip

Methods in org.jbei.ice.services.rest with parameters of type PartData

Modifier and Type	Method and Description
javax.ws.rs.core.Response	PartResource.create(String sourceId, PartData partData) Creates a new entry.
javax.ws.rs.core.Response	BulkUploadResource.createEntry(long uploadId, PartData data)
javax.ws.rs.core.Response	PartResource.createLink(String partId, LinkType type, PartData partData) Creates a new link between the referenced part id and the part in the parameter
javax.ws.rs.core.Response	PartResource.transfer(PartData partData)
javax.ws.rs.core.Response	PartResource.update(long partId, PartData partData) Update the part information at the specified resource identifier
javax.ws.rs.core.Response	BulkUploadResource.updateEntry(long uploadId, long entryId, PartData data)

Method parameters in org.jbei.ice.services.rest with type arguments of type PartData

Modifier and Type	Method and Description
javax.ws.rs.core.Response	PartResource.moveToTrash(ArrayList<PartData> list)

Uses of PartData in org.jbei.ice.servlet

Methods in org.jbei.ice.servlet with parameters of type PartData

Modifier and Type	Method and Description
static Entry	InfoToModelFactory.infoToEntry(PartData info)
static Entry	InfoToModelFactory.updateEntryField(PartData data, Entry entry) sets the corresponding fields in data only if they are not null

Uses of PartData in org.jbei.ice.storage

Methods in org.jbei.ice.storage that return PartData

Modifier and Type	Method and Description
static PartData	ModelToInfoFactory.createTableViewData(String userId, Entry entry, boolean includeOwnerInfo)
static PartData	ModelToInfoFactory.createTipView(Entry entry)
static PartData	ModelToInfoFactory.getCommon(PartData info, Entry entry)
static PartData	ModelToInfoFactory.getInfo(Entry entry)

Methods in org.jbei.ice.storage with parameters of type PartData

Modifier and Type	Method and Description
static PartData	ModelToInfoFactory.getCommon(PartData info, Entry entry)

Uses of PartData in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return PartData

Modifier and Type	Method and Description
PartData	Entry.toDataTransferObject()
PartData	Strain.toDataTransferObject()
PartData	Plasmid.toDataTransferObject()
PartData	ArabidopsisSeed.toDataTransferObject()