Uses of Class
org.jbei.ice.lib.entry.sequence.SequenceFormat

Packages that use SequenceFormat

Package	Description
org.jbei.ice.lib.dto.entry
org.jbei.ice.lib.entry.sequence
org.jbei.ice.storage.model	Data models for ice objects.

Uses of SequenceFormat in org.jbei.ice.lib.dto.entry

Methods in org.jbei.ice.lib.dto.entry that return SequenceFormat

Modifier and Type	Method and Description
SequenceFormat	SequenceInfo.getFormat()

Methods in org.jbei.ice.lib.dto.entry with parameters of type SequenceFormat

Modifier and Type	Method and Description
void	SequenceInfo.setFormat(SequenceFormat format)

Uses of SequenceFormat in org.jbei.ice.lib.entry.sequence

Methods in org.jbei.ice.lib.entry.sequence that return SequenceFormat

Modifier and Type	Method and Description
protected SequenceFormat	PartSequence.detectFormat(String sequenceString) Attempts to detect the sequence format from the first line of a stream using the following heuristics If line starts with LOCUS then assumed to be a genbank file If line starts with > then assumed to be a fasta file If line starts with < then assumed to be an sbol file Anything else is assumed to be plain nucleotides
static SequenceFormat	SequenceFormat.fromString(String type)
static SequenceFormat	SequenceFormat.valueOf(String name) Returns the enum constant of this type with the specified name.
static SequenceFormat[]	SequenceFormat.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.jbei.ice.lib.entry.sequence with parameters of type SequenceFormat

Modifier and Type	Method and Description
ByteArrayWrapper	SequenceController.getSequenceFile(String userId, long partId, SequenceFormat format)

Uses of SequenceFormat in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return SequenceFormat

Modifier and Type	Method and Description
SequenceFormat	Sequence.getFormat()

Methods in org.jbei.ice.storage.model with parameters of type SequenceFormat

Modifier and Type	Method and Description
void	Sequence.setFormat(SequenceFormat format)