Uses of Class
org.jbei.ice.lib.search.blast.BlastException

Packages that use BlastException

Package	Description
org.jbei.ice.lib.search.blast	BLAST search classes.

Uses of BlastException in org.jbei.ice.lib.search.blast

Methods in org.jbei.ice.lib.search.blast that throw BlastException

Modifier and Type	Method and Description
static void	BlastPlus.rebuildDatabase(boolean force) Re-builds the blast database, using a lock file to prevent concurrent rebuilds.
static HashMap<String,SearchResult>	BlastPlus.runBlast(BlastQuery query) Run a blast query using the following output format options stitle - subject title qstart - query match start index qend - query match end index sstart - subject match start index send sstrand evalue bitscore length - alignment length nident - number of identical matches
static List<Bl2SeqResult>	BlastPlus.runBlast2Seq(String query, String subject) Run the bl2seq program on multiple subjects.
static List<DNAFeature>	BlastPlus.runCheckFeatures(BlastQuery query) Run a blast query against the sequence features blast database.