Uses of Class
org.jbei.ice.lib.dto.entry.SequenceInfo

Packages that use SequenceInfo

Package	Description
org.jbei.ice.lib.bulkupload
org.jbei.ice.lib.entry.sequence
org.jbei.ice.lib.parsers	Parsers for different file formats.
org.jbei.ice.lib.parsers.sbol
org.jbei.ice.storage.model	Data models for ice objects.

Uses of SequenceInfo in org.jbei.ice.lib.bulkupload

Methods in org.jbei.ice.lib.bulkupload that return SequenceInfo

Modifier and Type	Method and Description
SequenceInfo	BulkUploadController.addSequence(String userId, long bulkUploadId, long entryId, String sequenceString, String fileName)

Uses of SequenceInfo in org.jbei.ice.lib.entry.sequence

Methods in org.jbei.ice.lib.entry.sequence that return SequenceInfo

Modifier and Type	Method and Description
SequenceInfo	PartSequence.parseSequenceFile(InputStream inputStream, String fileName, boolean extractHierarchy) Parses a sequence in a file and associates it with the current entry
protected SequenceInfo	PartSequence.save(DNASequence dnaSequence, String sequenceString, String fileName)

Uses of SequenceInfo in org.jbei.ice.lib.parsers

Methods in org.jbei.ice.lib.parsers that return SequenceInfo

Modifier and Type	Method and Description
protected SequenceInfo	AbstractParser.save(DNASequence dnaSequence, String sequenceString)

Uses of SequenceInfo in org.jbei.ice.lib.parsers.sbol

Methods in org.jbei.ice.lib.parsers.sbol that return SequenceInfo

Modifier and Type	Method and Description
SequenceInfo	SBOLParser.parseToEntry(String textSequence, String fileName)
protected SequenceInfo	SBOLParser.parseToGenBank(org.sbolstandard.core2.SBOLDocument sbolDocument, String fileName, Entry entry, String uri) Parse the SBOL document to genbank format, save and associate with entry

Uses of SequenceInfo in org.jbei.ice.storage.model

Methods in org.jbei.ice.storage.model that return SequenceInfo

Modifier and Type	Method and Description
SequenceInfo	Sequence.toDataTransferObject()