Uses of Class
org.jbei.ice.lib.dto.DNASequence

Packages that use DNASequence

Package	Description
org.jbei.ice.lib.dto	Value Objects classes.
org.jbei.ice.lib.dto.entry
org.jbei.ice.lib.entry.sequence
org.jbei.ice.lib.parsers	Parsers for different file formats.
org.jbei.ice.lib.parsers.genbank

Uses of DNASequence in org.jbei.ice.lib.dto

Subclasses of DNASequence in org.jbei.ice.lib.dto

Modifier and Type	Class and Description
class	FeaturedDNASequence Value object to hold DNAFeatures and some genbank file information.

Uses of DNASequence in org.jbei.ice.lib.dto.entry

Methods in org.jbei.ice.lib.dto.entry that return DNASequence

Modifier and Type	Method and Description
DNASequence	SequenceInfo.getSequence()

Methods in org.jbei.ice.lib.dto.entry with parameters of type DNASequence

Modifier and Type	Method and Description
void	SequenceInfo.setSequence(DNASequence sequence)

Uses of DNASequence in org.jbei.ice.lib.entry.sequence

Methods in org.jbei.ice.lib.entry.sequence with parameters of type DNASequence

Modifier and Type	Method and Description
static Sequence	SequenceController.dnaSequenceToSequence(DNASequence dnaSequence) Create a Sequence object from an DNASequence object.
protected SequenceInfo	PartSequence.save(DNASequence dnaSequence, String sequenceString, String fileName)

Uses of DNASequence in org.jbei.ice.lib.parsers

Methods in org.jbei.ice.lib.parsers that return DNASequence

Modifier and Type	Method and Description
DNASequence	ABIParser.parse(byte[] bytes)
DNASequence	GeneralParser.parse(byte[] bytes)
DNASequence	AbstractParser.parse(String textSequence)
DNASequence	GeneralParser.parse(String sequence)
DNASequence	PlainParser.parse(String textSequence)

Methods in org.jbei.ice.lib.parsers with parameters of type DNASequence

Modifier and Type	Method and Description
protected SequenceInfo	AbstractParser.save(DNASequence dnaSequence, String sequenceString)

Uses of DNASequence in org.jbei.ice.lib.parsers.genbank

Methods in org.jbei.ice.lib.parsers.genbank that return DNASequence

Modifier and Type	Method and Description
DNASequence	GenBankParser.parse(String textSequence)