Package | Description |
---|---|
org.jbei.ice.lib.access |
Permissions related classes.
|
org.jbei.ice.lib.entry | |
org.jbei.ice.lib.entry.sample | |
org.jbei.ice.lib.entry.sequence | |
org.jbei.ice.lib.experiment | |
org.jbei.ice.lib.parsers |
Parsers for different file formats.
|
org.jbei.ice.lib.parsers.fasta |
Parser for fasta.
|
org.jbei.ice.lib.parsers.genbank | |
org.jbei.ice.lib.parsers.sbol |
Modifier and Type | Class and Description |
---|---|
class |
Permissions |
Modifier and Type | Class and Description |
---|---|
class |
Entries |
class |
EntryController
ABI to manipulate
Entry s. |
class |
EntryCreator |
class |
EntryFolders
Folders that an entry is contained in
|
class |
EntryLinks
Represents a main part and the hierarchical links that it is involved in.
|
class |
EntryPermissions
Permissions associated with a specified entry
|
Modifier and Type | Class and Description |
---|---|
class |
SampleService
Service for dealing with
Sample s |
Modifier and Type | Class and Description |
---|---|
class |
PartSequence
Biological part with associated sequence information
|
class |
SequenceController
ABI to manipulate
Sequence s. |
Modifier and Type | Class and Description |
---|---|
class |
Experiments
Links to experimental data associated with entries
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractParser |
class |
PlainParser
Parser to handle file with simply nucleotide sequences.
|
Modifier and Type | Class and Description |
---|---|
class |
FastaParser
Parse FASTA files.
|
Modifier and Type | Class and Description |
---|---|
class |
GenBankParser
Genbank parser and generator.
|
Modifier and Type | Class and Description |
---|---|
class |
SBOLParser
Parse SBOL files that are imported by the user.
|
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