Uses of Class
org.jbei.ice.lib.dto.search.BlastQuery

Packages that use BlastQuery

Package	Description
org.jbei.ice.lib.dto.search
org.jbei.ice.lib.search.blast	BLAST search classes.

Uses of BlastQuery in org.jbei.ice.lib.dto.search

Methods in org.jbei.ice.lib.dto.search that return BlastQuery

Modifier and Type	Method and Description
BlastQuery	SearchQuery.getBlastQuery()

Methods in org.jbei.ice.lib.dto.search with parameters of type BlastQuery

Modifier and Type	Method and Description
void	SearchQuery.setBlastQuery(BlastQuery blastQuery)

Uses of BlastQuery in org.jbei.ice.lib.search.blast

Methods in org.jbei.ice.lib.search.blast with parameters of type BlastQuery

Modifier and Type	Method and Description
static HashMap<String,SearchResult>	BlastPlus.runBlast(BlastQuery query) Run a blast query using the following output format options stitle - subject title qstart - query match start index qend - query match end index sstart - subject match start index send sstrand evalue bitscore length - alignment length nident - number of identical matches
static List<DNAFeature>	BlastPlus.runCheckFeatures(BlastQuery query) Run a blast query against the sequence features blast database.