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ice 5.3.1 API

Packages 
Package Description
org.jbei.auth  
org.jbei.auth.hmac  
org.jbei.ice  
org.jbei.ice.lib.access
Permissions related classes.
org.jbei.ice.lib.account  
org.jbei.ice.lib.account.authentication
Authentication classes.
org.jbei.ice.lib.bulkupload  
org.jbei.ice.lib.common.logging
Logging facilities.
org.jbei.ice.lib.config  
org.jbei.ice.lib.dto
Value Objects classes.
org.jbei.ice.lib.dto.access  
org.jbei.ice.lib.dto.bulkupload  
org.jbei.ice.lib.dto.comment  
org.jbei.ice.lib.dto.common  
org.jbei.ice.lib.dto.entry  
org.jbei.ice.lib.dto.folder  
org.jbei.ice.lib.dto.group  
org.jbei.ice.lib.dto.message  
org.jbei.ice.lib.dto.sample  
org.jbei.ice.lib.dto.search  
org.jbei.ice.lib.dto.user  
org.jbei.ice.lib.dto.web  
org.jbei.ice.lib.email  
org.jbei.ice.lib.entry  
org.jbei.ice.lib.entry.attachment  
org.jbei.ice.lib.entry.sample  
org.jbei.ice.lib.entry.sequence  
org.jbei.ice.lib.entry.sequence.annotation  
org.jbei.ice.lib.entry.sequence.composers
Wrapper classes for formatted sequence generators.
org.jbei.ice.lib.entry.sequence.composers.formatters
Formatters for various sequence file formats.
org.jbei.ice.lib.entry.sequence.composers.pigeon  
org.jbei.ice.lib.executor  
org.jbei.ice.lib.experiment  
org.jbei.ice.lib.folder  
org.jbei.ice.lib.folder.collection  
org.jbei.ice.lib.group  
org.jbei.ice.lib.manuscript  
org.jbei.ice.lib.message  
org.jbei.ice.lib.net  
org.jbei.ice.lib.parsers
Parsers for different file formats.
org.jbei.ice.lib.parsers.abi  
org.jbei.ice.lib.parsers.bl2seq
Parser for bl2seq.
org.jbei.ice.lib.parsers.fasta
Parser for fasta.
org.jbei.ice.lib.parsers.genbank  
org.jbei.ice.lib.parsers.sbol  
org.jbei.ice.lib.search  
org.jbei.ice.lib.search.blast
BLAST search classes.
org.jbei.ice.lib.search.filter  
org.jbei.ice.lib.shared  
org.jbei.ice.lib.utils
Non-web related utility classes.
org.jbei.ice.services.rest  
org.jbei.ice.services.rest.multipart  
org.jbei.ice.servlet  
org.jbei.ice.servlet.filter  
org.jbei.ice.storage
Database access classes.
org.jbei.ice.storage.hibernate  
org.jbei.ice.storage.hibernate.bridge  
org.jbei.ice.storage.hibernate.dao  
org.jbei.ice.storage.hibernate.filter  
org.jbei.ice.storage.hibernate.search  
org.jbei.ice.storage.model
Data models for ice objects.
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